|
Problem with GromacsVersionError: Gromacs version should be 5.1.2 or newer 0 detected
|
|
23
|
352
|
October 2, 2023
|
|
Problem running gromacs simulation
|
|
27
|
237
|
November 14, 2023
|
|
Challenges in Reproducing ddG Estimation Results for 1STN
|
|
27
|
196
|
April 19, 2024
|
|
Protein-glycan docking
|
|
14
|
216
|
September 29, 2023
|
|
Active-passive-to-ambig.py
|
|
15
|
199
|
May 26, 2023
|
|
PRODIGY Error running my PDB file containing my docked proteins from ClusPro
|
|
15
|
167
|
August 10, 2023
|
|
Problem with the CNS executable
|
|
9
|
189
|
June 5, 2023
|
|
Local HADDOCK3 missing ligands
|
|
9
|
242
|
May 26, 2023
|
|
Water Refinement HADDOCK 2.4
|
|
9
|
204
|
June 28, 2023
|
|
Error when running all my haddocks after server shutdown error
|
|
13
|
164
|
August 7, 2023
|
|
Issues when docking glycans
|
|
9
|
182
|
September 22, 2023
|
|
Profit:: Too many arguments
|
|
11
|
148
|
June 8, 2023
|
|
Haddock submission homodimer + 2 testo + 2 NAD ligands - doubts
|
|
10
|
124
|
December 12, 2023
|
|
Find NOE violations
|
|
14
|
86
|
February 14, 2024
|
|
How to interpret HADDOCK Result?
|
|
1
|
356
|
November 23, 2023
|
|
Local HADDOCK3 errors
|
|
8
|
242
|
May 23, 2023
|
|
Covalent docking as mimic of protein engineering
|
|
5
|
150
|
May 26, 2023
|
|
Absolute Binding Free Energy with pmx
|
|
5
|
298
|
May 24, 2023
|
|
How to generate HADDOCK restraints TBL file
|
|
4
|
267
|
May 1, 2023
|
|
Pmx ligandHybrid list index out of range error
|
|
4
|
287
|
July 19, 2023
|
|
Ab-initio warning
|
|
8
|
170
|
June 22, 2023
|
|
Haddock3 and slurm
|
|
5
|
175
|
May 29, 2023
|
|
PMX protein mutation tutorial
|
|
6
|
143
|
November 10, 2023
|
|
HADDOCK2.4 - Local installation - Exec format error
|
|
4
|
175
|
September 3, 2023
|
|
The number of partitions (ncvpart) for random removal of restraints must be an integer!
|
|
7
|
185
|
June 9, 2023
|
|
Ab-initio protocol
|
|
6
|
154
|
May 24, 2023
|
|
Ligand submission problem/covalent docking
|
|
2
|
209
|
June 23, 2023
|
|
Tutorial for protein-dna/rna docking
|
|
4
|
157
|
September 20, 2023
|
|
Help Needed with Protein-Ligand Topology in pmx Tutorial
|
|
4
|
183
|
October 13, 2023
|
|
Whiscy usage doubts
|
|
4
|
177
|
September 19, 2023
|
|
DisVis Internal Server Error
|
|
4
|
175
|
June 7, 2023
|
|
Metrics for the Evaluation of Docking Model Quality
|
|
6
|
146
|
May 2, 2023
|
|
Capping residues
|
|
7
|
127
|
August 7, 2023
|
|
HADDOCK Zinc finger protein
|
|
6
|
142
|
June 14, 2023
|
|
Docking 3 molecules using webserver
|
|
5
|
140
|
August 7, 2023
|
|
CNS library issue on compute cluster
|
|
5
|
134
|
July 31, 2023
|
|
PRODRG Help Needed
|
|
5
|
153
|
May 10, 2023
|
|
Water refinement HADDOCK2.2: data interpretation
|
|
3
|
159
|
August 31, 2023
|
|
Prodigy Error: Radius array is <= 0 for the residue: ILE ,atom: CD
|
|
2
|
187
|
June 12, 2023
|
|
Analysis energies
|
|
7
|
102
|
February 18, 2024
|
|
Cport issue on large protein
|
|
4
|
154
|
May 4, 2023
|
|
Proper use of Ambiguous and Unambiguous restraints in protein-peptide docking
|
|
7
|
106
|
February 21, 2024
|
|
Is it possible only to get Haddock scores from my docked complex without running docking?
|
|
4
|
138
|
February 12, 2024
|
|
Active Residues (Protein-protein Docking)
|
|
3
|
149
|
January 19, 2024
|
|
BioBB not working?
|
|
3
|
151
|
January 12, 2024
|
|
Issue with pdb2gmx and charm36mut forcefield: Undefined Atom Type "OH"
|
|
4
|
143
|
December 7, 2023
|
|
Error in PDB file. Unknown error: invalid literal for int() with base 10: '2+'
|
|
5
|
144
|
May 8, 2023
|
|
Problem with protein-ligand
|
|
2
|
165
|
September 20, 2023
|
|
Preparing small molecules for docking
|
|
4
|
146
|
August 18, 2023
|
|
Explicit membrane
|
|
3
|
160
|
June 12, 2023
|