Welcome to BioExcel feedback category. Here you can provide feedback on future development of our core softwares (GROMACS,HADDOCK,BioBB and PMX) and on BioExcel activities.

Here you ask questions to the BioExcel Webinar speakers. After each BioExcel Webinar, you can discuss the webinar topic with speaker for one week.

The HADDOCK category is meant for discussing any topic related to the use of the HADDOCK software, either as a local installation or via the HADDOCK web portal. For details about HADDOCK please refer to https://www.bonvinlab.org/software/haddock2.4
Feel free to create new topics related to your questions!

BioBB is a software library for interoperable biomolecular simulation workflows.

Automated protein structure and topology generation for alchemical perturbations. Web-server, source code, and examples at pmx.mpibpc.mpg.de/ .

Find the GROMACS forum at http://gromacs.bioexcel.eu

This is the forum for the SpotOn web portalwhich implements a robust algorithm developed to identify and classify the interfacial residues as Hot-Spots (HS) and Null-Spots (NS).

This is the forum for the PBD-tools web portal that allows to define workflows to manipulate PDB files and is designed to be a swiss-knife for the PDB format.

MDWeb - Molecular dynamics on the web provides a web interface to set up molecular dynamics simulations at https://mmb.irbbarcelona.org/MDWeb/

This category is for all discussions related to the Workflows Interest Group. Its primary audience is members of the IG but this forum is open for anyone to contribute.

Challenges combining quantum mechanics and molecular mechanics using CP2K and GROMACS

This is the help forum for DISVIS, a software and web portal that allows you to visualizes and quantify the information content of distance restraints between macromolecular complexes

General musings about molecular dynamics that do not relate directly to GROMACS, HADDOCK or CPMD

This is the help forum for POWERFIT, a software and web portal that allows you to automatically fits high-resolution atomic structures in cryo-EM densities.

Discussion about this site, its organization, how it works, and how we can improve it.

This is the forum for the PRODIGY web portal ( that predicts binding affinities for protein-protein (PRODIGY) and protein-small ligand (PRODIGY-LIG) complexes and also allows to classify an interface as biological or crystallographic.