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About the BioBB category
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0
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633
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May 26, 2020
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Problems running BD simulation in flexserv workflow
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1
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23
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May 29, 2026
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Using biobb_gromacs image on runpod
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2
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96
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March 26, 2025
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Utilizing GROMACS Simulation Files for DNA Structure Analysis with the biobb_dna Package
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11
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296
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August 19, 2024
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Exploring the Limitations of biobb_dna in Handling Large DNA Sequences
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3
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135
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August 19, 2024
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Problems with MD
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7
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482
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April 29, 2024
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BioBB not working?
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3
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279
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January 12, 2024
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Challenges in Installing biobb_dna on Ubuntu: Seeking Solutions
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7
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199
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December 27, 2023
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Using the Protein MD Setup tutorial using BioExcel Building Blocks (biobb) --AmberTools package version-- with Amber installed frome sources
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2
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246
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November 27, 2023
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Question about an argument in an amber_to_pdb call in Protein MD Setup tutorial using BioExcel Building Blocks (biobb) --AmberTools package version--
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2
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166
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November 27, 2023
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Examples for a section of the Molecular Structure Checking wf
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2
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273
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October 23, 2023
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Problem with Fatal error from gmx pdb2gmx in the Protein MD Setup wf
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2
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236
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October 11, 2023
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Line filtering in a fetched PDB in biobb gromacs tutorial
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2
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259
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October 2, 2023
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Problem with GromacsVersionError: Gromacs version should be 5.1.2 or newer 0 detected
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23
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694
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October 2, 2023
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Trajectory File Size
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1
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286
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January 16, 2023
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Any foreseen update of BioBB for Ambertools 22?
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1
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339
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December 22, 2022
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Str_check_add_hydrogens
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1
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359
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July 1, 2022
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Biobb_md: set log.out and log.err on any tool
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4
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448
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June 14, 2022
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How to prepare input PDB file (not from PDB database) for MD simulation in BioExcel Building Blocks?
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1
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526
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April 25, 2022
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Add custom flags for GROMACS mdrun
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2
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452
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February 17, 2022
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Extending the receptor-ligand tutorial to cofactors and metals?
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13
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940
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September 7, 2021
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How to write the log.out and log.err files to a custom directory
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2
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600
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February 8, 2021
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Conda install of biobb_md stalls
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7
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915
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November 19, 2020
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Ligand Binding Free Energies with PMX
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2
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689
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November 12, 2020
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CP2K command to start simulation
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2
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716
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September 7, 2020
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ExtractHeteroAtoms returns empty heteroatom file
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4
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767
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July 29, 2020
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Charmm parameterization
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3
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598
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July 28, 2020
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Adding pdb file for protein-ligand complex in setup of BioBB MD setup
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1
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736
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July 28, 2020
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