|
About the BioBB category
|
|
0
|
608
|
May 26, 2020
|
|
Using biobb_gromacs image on runpod
|
|
2
|
8
|
March 26, 2025
|
|
Utilizing GROMACS Simulation Files for DNA Structure Analysis with the biobb_dna Package
|
|
11
|
151
|
August 19, 2024
|
|
Exploring the Limitations of biobb_dna in Handling Large DNA Sequences
|
|
3
|
78
|
August 19, 2024
|
|
Problems with MD
|
|
7
|
330
|
April 29, 2024
|
|
BioBB not working?
|
|
3
|
213
|
January 12, 2024
|
|
Challenges in Installing biobb_dna on Ubuntu: Seeking Solutions
|
|
7
|
130
|
December 27, 2023
|
|
Using the Protein MD Setup tutorial using BioExcel Building Blocks (biobb) --AmberTools package version-- with Amber installed frome sources
|
|
2
|
174
|
November 27, 2023
|
|
Question about an argument in an amber_to_pdb call in Protein MD Setup tutorial using BioExcel Building Blocks (biobb) --AmberTools package version--
|
|
2
|
137
|
November 27, 2023
|
|
Examples for a section of the Molecular Structure Checking wf
|
|
2
|
219
|
October 23, 2023
|
|
Problem with Fatal error from gmx pdb2gmx in the Protein MD Setup wf
|
|
2
|
198
|
October 11, 2023
|
|
Line filtering in a fetched PDB in biobb gromacs tutorial
|
|
2
|
194
|
October 2, 2023
|
|
Problem with GromacsVersionError: Gromacs version should be 5.1.2 or newer 0 detected
|
|
23
|
500
|
October 2, 2023
|
|
Trajectory File Size
|
|
1
|
244
|
January 16, 2023
|
|
Any foreseen update of BioBB for Ambertools 22?
|
|
1
|
295
|
December 22, 2022
|
|
Str_check_add_hydrogens
|
|
1
|
332
|
July 1, 2022
|
|
Biobb_md: set log.out and log.err on any tool
|
|
4
|
386
|
June 14, 2022
|
|
How to prepare input PDB file (not from PDB database) for MD simulation in BioExcel Building Blocks?
|
|
1
|
496
|
April 25, 2022
|
|
Add custom flags for GROMACS mdrun
|
|
2
|
426
|
February 17, 2022
|
|
Extending the receptor-ligand tutorial to cofactors and metals?
|
|
13
|
824
|
September 7, 2021
|
|
How to write the log.out and log.err files to a custom directory
|
|
2
|
566
|
February 8, 2021
|
|
Conda install of biobb_md stalls
|
|
7
|
826
|
November 19, 2020
|
|
Ligand Binding Free Energies with PMX
|
|
2
|
628
|
November 12, 2020
|
|
CP2K command to start simulation
|
|
2
|
671
|
September 7, 2020
|
|
ExtractHeteroAtoms returns empty heteroatom file
|
|
4
|
713
|
July 29, 2020
|
|
Charmm parameterization
|
|
3
|
532
|
July 28, 2020
|
|
Adding pdb file for protein-ligand complex in setup of BioBB MD setup
|
|
1
|
694
|
July 28, 2020
|