I want to get the score only for my docked complex.
Do you mean getting the HADDOCK score for a complex obtained from some other method?
Or from a HADDOCK model?
I meant a complex obtained from other methods, like Clustpro/GRAMMDOCK, I already got the scores from the haddock run.
I wanted to compare the scores.
If you were to install the new (still beta) HADDOCK3 version we have a haddock3-score command that will return the score (it will perform a short EM).
In HADDOCK3 you could also run a scoring workflow for all your complexes (check the scoring / emscoring example).
To compare the scores I would suggest to also run the same on your HADDOCK models to possibly remove the restraint energy.
Alternatively, you can run your model through the refinement server of HADDOCK2.4
Thank you! Haddock3 worked.