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About pmx: Automated protein structure and topology generation for alchemical perturbations
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0
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1209
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June 10, 2016
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Pmx RBFE gives oddly large deltaG
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0
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5
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August 12, 2022
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Ligand topolgies for pmx
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1
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26
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July 18, 2022
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PMX engineered resiude
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4
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47
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July 18, 2022
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Pmx ABFE ligand only simulation set-up
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3
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34
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July 18, 2022
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Using pmx genlib and hybrid topologies
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3
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46
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July 11, 2022
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PMX generating protein ligand simulation system with Charmm/cgenff forcefields
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1
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77
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June 14, 2022
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Free energy calculations error
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1
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98
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June 14, 2022
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Free Energy Calculation: State B has non-zero total charge: -1.000000
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1
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64
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June 14, 2022
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Free energy calculation with double system/single box simulation
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12
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126
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March 30, 2022
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Error with Zn atom
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3
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92
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March 29, 2022
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Problem with SS bridges - Bug?
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3
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87
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March 24, 2022
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Peptide Nucleic Acid Functionality
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2
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124
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January 2, 2022
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Pmx - problems reproducing benchmarking from de Groot 2020
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2
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182
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October 17, 2021
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Itp ligand file generation
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3
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368
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October 14, 2021
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A non-finite potential energy in non-equilibrium transition with pmx
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2
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221
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October 1, 2021
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Alchemical free energy calculations
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1
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195
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October 1, 2021
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LINCS error during Alchemical free energy calculation
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1
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198
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September 30, 2021
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Energy minimization of hybrid ligand
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2
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302
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November 13, 2020
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Relative constraint deviation after LINCS
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6
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868
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October 9, 2020
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Dual Topology Generator for Alchemical Pathways
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1
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492
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October 9, 2020
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Make_hybrid.py list index out of range error
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2
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359
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October 9, 2020
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Installed - can't import _pmx as _p
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3
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562
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July 4, 2020
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Follow-Up from Webinar: Mutation free energy calculations with pmx
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0
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1251
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June 10, 2016
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