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Extrating Kd with HADDOCK3
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1
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11
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February 26, 2026
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Help creating and using one topology file for multiple non-standard amino acids
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8
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37
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February 12, 2026
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ARCTIC-3d is not working
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3
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8
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February 5, 2026
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NVT vs NPT for Non-Equilibrium Switching in pmx/GROMACS
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1
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24
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January 26, 2026
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HADDOCK2.4 Job Stuck in 'Queued' Status for Several Days - Seeking Assistance
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6
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97
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November 10, 2025
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Binding affinity and Kd prediction
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1
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68
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November 3, 2025
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How do I choose the active residues?
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1
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59
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October 30, 2025
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Problem with restraints file in haddock2.4
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1
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37
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September 25, 2025
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Rigid-body step fails with 100% output not generated (tolerance 5%)
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16
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185
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September 22, 2025
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HADDOCK on multi-chain receptor: how to approach?
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3
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107
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September 16, 2025
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About the pair to active/passive selection set numbers
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1
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40
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August 12, 2025
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Fatal Error: Test of FFT3C failed after compiling CNS
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8
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65
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July 14, 2025
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Why it is not accepting the specified active/passive residues?
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0
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28
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July 9, 2025
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Protein-protein docking parameters
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2
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67
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July 1, 2025
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Predicting interaction from PRE data
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1
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26
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June 23, 2025
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Error while uploading a structure for refinement
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4
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46
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June 5, 2025
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How to deal with disulfite bond in haddock3?
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0
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42
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April 29, 2025
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How to input 2 or more different small moleculers in haddock3 cfg file?
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3
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67
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April 9, 2025
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How to get a sort summary table
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4
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41
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April 10, 2025
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Cannot select both chains of MHC II complex for docking
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1
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31
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April 2, 2025
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Problems with deploying haddock to local operation
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10
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109
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March 24, 2025
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Carbohydrate not attached to ASN residue during docking
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3
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53
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March 9, 2025
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Anywhere can generate a proper ligand PDB file? ChemDraw file is not working, and rewrite with pymol also not working
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3
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84
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March 7, 2025
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PMX Ligand Preparation from Scratch - Atom Types and Parameter Discrepancies
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2
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76
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February 28, 2025
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2 Protein-1 DNA Docking
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1
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84
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January 2, 2025
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Protein-DNA docking and Protein-UV induced DNA docking
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1
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36
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December 31, 2024
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Issues with Job Queue in HADDOCK: Request for Assistance
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3
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46
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December 30, 2024
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Error generating topology for small ligand in HADDOCK 2.4 webserver
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1
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56
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December 29, 2024
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Protein and cell membrane docking
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2
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49
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December 26, 2024
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Regarding the pmx tutorial
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0
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22
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December 5, 2024
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