Turotial error for HADDOCK 2.4 basic protein-glycan modelling tutorial

HADDOCK
1

Hello,

I’ve tried to use the basic protein-glycan modelling tutorial before I will use my own samples. However, following the tutorial exactly with the same molecules, I have encountered some error messages that I do not know how to solve.

  1. As you can see in the pic, I’ve got the expert/guru access error message, even though the tutorial clearly says that I should uncheck this option. When I do not uncheck and leave in on deafult I get another error message.

  2. The second error message I get is that I have to supply active or passive residues. I did it as the tutorial said, choose protein as active and glycan and passive, but still it doesn’t work.

What I am doing wrong? Thank you!

2

Dear Zuzana,
Thanks for your interest in using HADDOCK for your research.

Which tutorial are you following exactly ?

  1. Unfortunately, we cannot see the pic. Also, what are the error message you get ?
  2. It is surprising, it should be functional. Please show the error messages to help us to help you
3

Hello, I am using this tutorial HADDOCK2.4 basic protein-glycan modelling tutorial – Bonvin Lab .

Hope you can see the messages now.

First error message. When unchecked (based on the tutorial), it shows this.
First error message. When unchecked (based on the tutorial), it shows this.1548×1267 64.9 KB

4

This is the second error, eventhought I followed the tutorial.

3
31657×1259 114 KB

5

You do need to request elevated permissions for this (to uncheck “Remove buried…”). It can be done in user dashboard: CSBPortal