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Welcome to ask.bioexcel.eu
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1
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2104
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March 23, 2016
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Ligand conformer generator
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7
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12
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January 6, 2026
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Suitable tool for docking stapled peptide and protein
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1
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4
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December 10, 2025
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Need to dock 1000 peptide for one protein in HPC. Is there is any way to do that in one job?
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5
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46
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December 8, 2025
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Z-score is zero
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2
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19
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November 19, 2025
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Unusual bonds in -OSO3 of ligand after docking
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3
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26
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November 14, 2025
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TIP in my pdb file
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2
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30
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November 9, 2025
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Haddock Queued for a long time
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0
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11
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November 3, 2025
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Docking with protein embedded in a bacterial membrane
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1
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27
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October 31, 2025
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Investigating the effect of point mutation in the binding affinity of my protein with a ligand
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6
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42
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October 3, 2025
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New User Question- HADDOCK
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39
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501
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September 18, 2025
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Parameter file lost
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1
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6
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September 7, 2025
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RMSD of docked proteins vs co-crystallized structure from PDB
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4
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77
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September 3, 2025
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Error in the topology generation: prot_psf_mol2 could not be created on HPC
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13
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34
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August 19, 2025
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PS-HomPPI v2.0 - server error
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0
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18
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June 20, 2025
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ERROR_Active residue prediction
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0
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19
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June 2, 2025
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Fix multiple occupancies or insertions
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2
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42
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April 4, 2025
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Protonated state for HIS
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7
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91
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April 3, 2025
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why queued status
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1
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24
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March 24, 2025
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Inquiry regarding job queueing and not running
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2
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57
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March 19, 2025
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Protein-RNA docking-Optimize run for bioinformatics predictions
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6
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162
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March 4, 2025
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PDB-ERROR: Missing residues
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12
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163
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February 20, 2025
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CNS installation issue
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3
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335
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January 16, 2025
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HADDOCK2.5 waiting for the psf files
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1
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26
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January 13, 2025
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Bond length too high
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8
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77
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January 2, 2025
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Issues with Job Queue in HADDOCK: Request for Assistance
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3
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46
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December 30, 2024
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Invalid literal for int() with base 10: “ ”
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1
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21
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December 5, 2024
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Regarding the pmx tutorial
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0
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21
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December 5, 2024
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Pmx and gromacs for lprotein-ligand
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0
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22
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November 27, 2024
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Pmx protein-ligand tutorial
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0
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17
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November 26, 2024
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