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Using `martinize2` to get GōMartini coarse-grained protein parameters (Martini 3)
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0
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40
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March 18, 2026
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NVT vs NPT for Non-Equilibrium Switching in pmx/GROMACS
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1
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73
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January 26, 2026
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Using PMX for ΔΔG on a glycosylated Fc (P238D back-mutation; PDB 3WJJ): viable workflows?
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5
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122
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November 20, 2025
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Absolute binding Free energy with NE-MD: Single-step complex leg & Boresch restraint tips
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1
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158
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August 4, 2025
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Protein-protein docking parameters
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2
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96
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July 1, 2025
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(@marco.giulini) BioexcelWebinar#85: Modeling antibodies in the post-Alphafold era: Where are we now?
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17
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216
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May 13, 2025
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Using biobb_gromacs image on runpod
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2
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96
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March 26, 2025
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GROMACS Domain Decomposition Errors in Protein-Membrane Simulation with Martini
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0
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91
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March 5, 2025
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Pmx analyse says "no good dgdl files provided"
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2
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59
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January 13, 2025
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Protein and cell membrane docking
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2
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74
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December 26, 2024
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PMX AssertionError, Atom type OH not been defined in the force field, Atom DHD1 was not found
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3
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101
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November 13, 2024
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Utilizing GROMACS Simulation Files for DNA Structure Analysis with the biobb_dna Package
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11
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296
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August 19, 2024
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Example for software feedback
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0
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88
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July 5, 2024
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