|
Using `martinize2` to get GōMartini coarse-grained protein parameters (Martini 3)
|
|
0
|
24
|
March 18, 2026
|
|
NVT vs NPT for Non-Equilibrium Switching in pmx/GROMACS
|
|
1
|
58
|
January 26, 2026
|
|
Using PMX for ΔΔG on a glycosylated Fc (P238D back-mutation; PDB 3WJJ): viable workflows?
|
|
5
|
102
|
November 20, 2025
|
|
Absolute binding Free energy with NE-MD: Single-step complex leg & Boresch restraint tips
|
|
1
|
138
|
August 4, 2025
|
|
Protein-protein docking parameters
|
|
2
|
83
|
July 1, 2025
|
|
(@marco.giulini) BioexcelWebinar#85: Modeling antibodies in the post-Alphafold era: Where are we now?
|
|
17
|
159
|
May 13, 2025
|
|
Using biobb_gromacs image on runpod
|
|
2
|
81
|
March 26, 2025
|
|
GROMACS Domain Decomposition Errors in Protein-Membrane Simulation with Martini
|
|
0
|
84
|
March 5, 2025
|
|
Pmx analyse says "no good dgdl files provided"
|
|
2
|
48
|
January 13, 2025
|
|
Protein and cell membrane docking
|
|
2
|
61
|
December 26, 2024
|
|
PMX AssertionError, Atom type OH not been defined in the force field, Atom DHD1 was not found
|
|
3
|
85
|
November 13, 2024
|
|
Utilizing GROMACS Simulation Files for DNA Structure Analysis with the biobb_dna Package
|
|
11
|
255
|
August 19, 2024
|
|
Example for software feedback
|
|
0
|
79
|
July 5, 2024
|