gromacs
| Topic | Replies | Views | Activity | |
|---|---|---|---|---|
| Using PMX for ΔΔG on a glycosylated Fc (P238D back-mutation; PDB 3WJJ): viable workflows? |
|
5 | 43 | November 20, 2025 |
| Absolute binding Free energy with NE-MD: Single-step complex leg & Boresch restraint tips |
|
1 | 55 | August 4, 2025 |
| Protein-protein docking parameters |
|
2 | 56 | July 1, 2025 |
| (@marco.giulini) BioexcelWebinar#85: Modeling antibodies in the post-Alphafold era: Where are we now? |
|
17 | 122 | May 13, 2025 |
| Using biobb_gromacs image on runpod |
|
2 | 43 | March 26, 2025 |
| GROMACS Domain Decomposition Errors in Protein-Membrane Simulation with Martini |
|
0 | 45 | March 5, 2025 |
| Pmx analyse says "no good dgdl files provided" |
|
2 | 30 | January 13, 2025 |
| Protein and cell membrane docking |
|
2 | 44 | December 26, 2024 |
| PMX AssertionError, Atom type OH not been defined in the force field, Atom DHD1 was not found |
|
3 | 55 | November 13, 2024 |
| Utilizing GROMACS Simulation Files for DNA Structure Analysis with the biobb_dna Package |
|
11 | 193 | August 19, 2024 |
| Example for software feedback |
|
0 | 54 | July 5, 2024 |