|
Prodigy cannot predict binding affinities for protein-protein by GRAMM-X docking model.
|
|
4
|
372
|
March 7, 2023
|
|
ValueError('No contacts found for selection')
|
|
7
|
375
|
February 9, 2023
|
|
I can't seem to get an output on prodigy
|
|
3
|
273
|
February 7, 2023
|
|
Error: Radius array is <= 0 for the residue: ILE ,atom: CD
|
|
9
|
1585
|
February 5, 2023
|
|
Prodigy training
|
|
2
|
210
|
January 6, 2023
|
|
PRODIGY Result not showing
|
|
2
|
276
|
August 9, 2022
|
|
PRODIGY: Job running status
|
|
4
|
349
|
August 4, 2022
|
|
Predicted Interface Unknown
|
|
1
|
258
|
July 29, 2022
|
|
Gap in protein chain and atom naming error
|
|
1
|
327
|
July 27, 2022
|
|
Is pH or protonation states considered in Prodigy?
|
|
1
|
259
|
May 27, 2022
|
|
Running PRODIGY ON Ubuntu
|
|
5
|
2252
|
May 10, 2022
|
|
Problem to recognize the .pdb file
|
|
1
|
433
|
April 19, 2022
|
|
Contact area and possible applicaitons of proligy-lig in designing new proteins
|
|
1
|
361
|
January 21, 2022
|
|
Problem with prodigy in ligand-protein
|
|
7
|
453
|
December 17, 2021
|
|
Prodigy "Protein-Protein" or "Protein-LIG" for protein-peptide complexes
|
|
1
|
501
|
December 6, 2021
|
|
PRODIGY error - "unable to submit job"
|
|
4
|
491
|
November 19, 2021
|
|
ProdigyLigand interpretation for drug potential
|
|
2
|
477
|
August 13, 2021
|
|
Some problems WHEN doing PRODIGY
|
|
11
|
549
|
August 13, 2021
|
|
Error: Radius array is <= 0 for the residue: ARG ,atom: O1
|
|
6
|
879
|
August 1, 2021
|
|
Some problems in doing PRODIGY
|
|
0
|
406
|
August 1, 2021
|
|
Archive file of all the outputs (.tgz) doesn't exist
|
|
4
|
443
|
May 6, 2021
|
|
Invalid literal for int() with base 10: ""B""
|
|
0
|
473
|
March 28, 2021
|
|
PRODIGY is out of work
|
|
4
|
583
|
March 1, 2021
|
|
Error during parsing(Unsupported non-standard amino acid found: NAG )
|
|
1
|
578
|
September 1, 2020
|
|
Prodigy del G and Kd values after Molecular Dynamics
|
|
1
|
709
|
July 17, 2020
|
|
Validity of Comparing Binding Energies for a Series of Mutations in a Native Peptide
|
|
3
|
648
|
July 1, 2020
|
|
Prodigy Error Rename File?
|
|
2
|
622
|
June 23, 2020
|
|
Local PRODIGY installation trouble
|
|
6
|
2056
|
April 2, 2020
|
|
DNA ligand Complex
|
|
5
|
798
|
January 22, 2020
|
|
Error during run on Prodigy server
|
|
4
|
1303
|
November 22, 2018
|