Error: Radius array is <= 0 for the residue: ARG ,atom: O1

PRODIGY
1

I am facing this error while doing my job!
What should I do?

Running Prodigy for structure sol_1
ERROR:
[!] Error when running freesasa:
[!] Error: Radius array is <= 0 for the residue: ARG ,atom: O1

2

Correct your atom naming to follow PDB standard, i.e. O1 → O, O2 → OXT …

3

Should change for only ARG residue? or every residue where naming is incorrect.

4

All I am afraid…

5

Sir，Error: Radius array is <= 0 for the residue: LEU ,atom: OC1，what could i do？

6

Do you mean CD1? Let has no OC1 atom…

When editing your pdb make sure to respect the column alignments

7

sir, it was from my job, and it shew
Running Prodigy for structure 500000 - 0
ERROR:
[!] Error when running freesasa:
[!] Error: Radius array is <= 0 for the residue: LEU ,atom: OC1