I tried to conda install biobb_md with the command in the documentation: conda install -c bioconda "biobb_md>=3.0.1" but this just stalls at “solving environment”
I tried to just do conda install -c bioconda biobb_md. i.e. without the version number, this works but the according to the conda message the version I get is actually biobb_md-0.1.5
Does anyone else have this problem and how should I resolve this? Thanks
Hi, as these packages are dependent on Python version >=3.7, could you please check the Python version of the environment where you are trying to install the biobb_md package? You can also try to install it in a new environment to see if the issue is related to the already existing environment.
sorry it took so long, my conda env is becoming too messy and I had quite some verification errors while installing to new environment. so spent quite some time to clean in order to make sure things are right.
So yeah I think with python 3.7(.8) I could successfully install the package. Three questions:
after importing biobb_md how can I check its version? I tried biobb_md.version
what dependency was required so lower python3 versions cannot be supported?
I saw that the gromacs from bioconda was also installed as a dependency. I would like to use biobb_md on the cluster with already installed version of gromacs, is that possible and if so how do I do that?