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Make_hybrid.py list index out of range error
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14
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1202
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December 4, 2023
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Questions on Non-equilibrium TI Phase with Slurm Scheduler in 'AZtutorial.py' Script
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2
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226
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December 4, 2023
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Error using mutate.py with charmm FF
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3
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207
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December 1, 2023
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Mutation involving two proteins
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2
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182
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November 29, 2023
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Performing Non-equilibrium Alchemical Transformations with Multiple Mutations
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3
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251
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November 24, 2023
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Please help me understand these values from the tutorial
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4
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242
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November 23, 2023
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Theoretical question about 'one box two systems'
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4
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193
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November 22, 2023
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PMX protein mutation tutorial
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6
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419
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November 10, 2023
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Different masses of dummy atoms in webserver pmx and standalone pmx
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1
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254
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October 31, 2023
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The use of GAFF1 vs GAFF2 with the pmx ff99SB*-ILDN forcefield
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2
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271
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October 25, 2023
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Pmx webserver is not running
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1
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159
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October 18, 2023
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Help Needed with Protein-Ligand Topology in pmx Tutorial
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4
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455
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October 13, 2023
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Problem with installing with Python2
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10
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530
|
October 13, 2023
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Pmx ligandHybrid list index out of range error
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4
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444
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July 19, 2023
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Absolute Binding Free Energy with pmx
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5
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716
|
May 24, 2023
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PMX user survey
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0
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227
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May 23, 2023
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PMX tutorial free energy sign
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1
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294
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May 11, 2023
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Pmx: possibility to run only once the dynamics of state A for A->B and A->C transformations + small question on the sign of dG
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5
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310
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May 1, 2023
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Is the pmx server running?
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2
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218
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April 17, 2023
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PMX repeatability is very poor
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8
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351
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April 4, 2023
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Janssen Ligand tutorial: why no -H2Hpolar flag in atoms_to_morph.py?
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1
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286
|
March 22, 2023
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AMBER99SB-ILDN warning alert
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3
|
379
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March 10, 2023
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Understanding the options of atom mapping and ligandHybrid
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57
|
980
|
February 23, 2023
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Oscillational period warning during tripeptide A2I forward simulation
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14
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727
|
January 31, 2023
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Problem in using gentop
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12
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364
|
January 20, 2023
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List index out of range when running pmx gentop
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2
|
376
|
December 29, 2022
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Bonds that rotated more than 30 degrees:
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1
|
399
|
November 3, 2022
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IndexError: list index out of range while preparing pdb file
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1
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460
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September 15, 2022
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Ligand topolgies for pmx
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5
|
631
|
September 1, 2022
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Pmx RBFE gives oddly large deltaG
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|
1
|
436
|
August 14, 2022
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