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Questions on Non-equilibrium TI Phase with Slurm Scheduler in 'AZtutorial.py' Script
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2
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212
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December 4, 2023
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Error using mutate.py with charmm FF
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3
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192
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December 1, 2023
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Mutation involving two proteins
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2
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166
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November 29, 2023
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Performing Non-equilibrium Alchemical Transformations with Multiple Mutations
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3
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228
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November 24, 2023
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Please help me understand these values from the tutorial
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4
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214
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November 23, 2023
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Theoretical question about 'one box two systems'
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4
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168
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November 22, 2023
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PMX protein mutation tutorial
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6
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373
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November 10, 2023
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Different masses of dummy atoms in webserver pmx and standalone pmx
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1
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244
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October 31, 2023
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The use of GAFF1 vs GAFF2 with the pmx ff99SB*-ILDN forcefield
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2
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240
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October 25, 2023
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Pmx webserver is not running
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1
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153
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October 18, 2023
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Help Needed with Protein-Ligand Topology in pmx Tutorial
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4
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430
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October 13, 2023
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Problem with installing with Python2
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10
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499
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October 13, 2023
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Pmx ligandHybrid list index out of range error
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4
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434
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July 19, 2023
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Absolute Binding Free Energy with pmx
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5
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658
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May 24, 2023
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PMX user survey
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0
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223
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May 23, 2023
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PMX tutorial free energy sign
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1
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280
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May 11, 2023
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Pmx: possibility to run only once the dynamics of state A for A->B and A->C transformations + small question on the sign of dG
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5
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282
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May 1, 2023
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Is the pmx server running?
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2
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215
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April 17, 2023
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PMX repeatability is very poor
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8
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332
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April 4, 2023
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Janssen Ligand tutorial: why no -H2Hpolar flag in atoms_to_morph.py?
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1
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284
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March 22, 2023
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AMBER99SB-ILDN warning alert
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3
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374
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March 10, 2023
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Understanding the options of atom mapping and ligandHybrid
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57
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870
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February 23, 2023
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Oscillational period warning during tripeptide A2I forward simulation
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14
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692
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January 31, 2023
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Problem in using gentop
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12
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338
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January 20, 2023
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List index out of range when running pmx gentop
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2
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363
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December 29, 2022
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Bonds that rotated more than 30 degrees:
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1
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391
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November 3, 2022
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IndexError: list index out of range while preparing pdb file
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1
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453
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September 15, 2022
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Ligand topolgies for pmx
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5
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604
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September 1, 2022
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Pmx RBFE gives oddly large deltaG
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1
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422
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August 14, 2022
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PMX engineered resiude
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4
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304
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July 18, 2022
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