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LINCS constraints all bonds to h-bonds only
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7
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254
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February 16, 2024
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Error with 'make_hybrid.py' Using CGenFF
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4
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217
|
February 12, 2024
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Issue with pdb2gmx and charm36mut forcefield: Undefined Atom Type "OH"
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4
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491
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December 7, 2023
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Make_hybrid.py list index out of range error
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14
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1317
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December 4, 2023
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Questions on Non-equilibrium TI Phase with Slurm Scheduler in 'AZtutorial.py' Script
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2
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259
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December 4, 2023
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Error using mutate.py with charmm FF
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3
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244
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December 1, 2023
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Mutation involving two proteins
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2
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230
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November 29, 2023
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Performing Non-equilibrium Alchemical Transformations with Multiple Mutations
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3
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346
|
November 24, 2023
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Please help me understand these values from the tutorial
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4
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290
|
November 23, 2023
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Theoretical question about 'one box two systems'
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4
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243
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November 22, 2023
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PMX protein mutation tutorial
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6
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492
|
November 10, 2023
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Different masses of dummy atoms in webserver pmx and standalone pmx
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1
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269
|
October 31, 2023
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The use of GAFF1 vs GAFF2 with the pmx ff99SB*-ILDN forcefield
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2
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328
|
October 25, 2023
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Pmx webserver is not running
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1
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188
|
October 18, 2023
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Help Needed with Protein-Ligand Topology in pmx Tutorial
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4
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521
|
October 13, 2023
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Problem with installing with Python2
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|
10
|
601
|
October 13, 2023
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Pmx ligandHybrid list index out of range error
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4
|
477
|
July 19, 2023
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Absolute Binding Free Energy with pmx
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5
|
807
|
May 24, 2023
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PMX user survey
|
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0
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241
|
May 23, 2023
|
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PMX tutorial free energy sign
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1
|
325
|
May 11, 2023
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Pmx: possibility to run only once the dynamics of state A for A->B and A->C transformations + small question on the sign of dG
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5
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368
|
May 1, 2023
|
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Is the pmx server running?
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2
|
247
|
April 17, 2023
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|
PMX repeatability is very poor
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8
|
423
|
April 4, 2023
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Janssen Ligand tutorial: why no -H2Hpolar flag in atoms_to_morph.py?
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1
|
317
|
March 22, 2023
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AMBER99SB-ILDN warning alert
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3
|
417
|
March 10, 2023
|
|
Understanding the options of atom mapping and ligandHybrid
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57
|
1510
|
February 23, 2023
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Oscillational period warning during tripeptide A2I forward simulation
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14
|
839
|
January 31, 2023
|
|
Problem in using gentop
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|
12
|
475
|
January 20, 2023
|
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List index out of range when running pmx gentop
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2
|
401
|
December 29, 2022
|
|
Bonds that rotated more than 30 degrees:
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|
1
|
414
|
November 3, 2022
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