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Ligand topolgies for pmx
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|
5
|
372
|
September 1, 2022
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|
Pmx RBFE gives oddly large deltaG
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|
1
|
229
|
August 14, 2022
|
|
PMX engineered resiude
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|
4
|
220
|
July 18, 2022
|
|
Pmx ABFE ligand only simulation set-up
|
|
3
|
324
|
July 18, 2022
|
|
Using pmx genlib and hybrid topologies
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|
3
|
372
|
July 11, 2022
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|
PMX generating protein ligand simulation system with Charmm/cgenff forcefields
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|
1
|
309
|
June 14, 2022
|
|
Free energy calculations error
|
|
1
|
874
|
June 14, 2022
|
|
Free Energy Calculation: State B has non-zero total charge: -1.000000
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|
1
|
301
|
June 14, 2022
|
|
Free energy calculation with double system/single box simulation
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|
12
|
417
|
March 30, 2022
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|
Error with Zn atom
|
|
3
|
315
|
March 29, 2022
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Problem with SS bridges - Bug?
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|
3
|
262
|
March 24, 2022
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|
Peptide Nucleic Acid Functionality
|
|
2
|
342
|
January 2, 2022
|
|
Pmx - problems reproducing benchmarking from de Groot 2020
|
|
2
|
499
|
October 17, 2021
|
|
Itp ligand file generation
|
|
3
|
810
|
October 14, 2021
|
|
A non-finite potential energy in non-equilibrium transition with pmx
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|
2
|
387
|
October 1, 2021
|
|
Alchemical free energy calculations
|
|
1
|
357
|
October 1, 2021
|
|
LINCS error during Alchemical free energy calculation
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|
1
|
406
|
September 30, 2021
|
|
Energy minimization of hybrid ligand
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|
2
|
483
|
November 13, 2020
|
|
Relative constraint deviation after LINCS
|
|
6
|
1821
|
October 9, 2020
|
|
Dual Topology Generator for Alchemical Pathways
|
|
1
|
726
|
October 9, 2020
|
|
Installed - can't import _pmx as _p
|
|
3
|
898
|
July 4, 2020
|
|
Follow-Up from Webinar: Mutation free energy calculations with pmx
|
|
0
|
1432
|
June 10, 2016
|