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AMBER99SB-ILDN warning alert
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|
3
|
328
|
March 10, 2023
|
|
Understanding the options of atom mapping and ligandHybrid
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|
57
|
682
|
February 23, 2023
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Oscillational period warning during tripeptide A2I forward simulation
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14
|
604
|
January 31, 2023
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Problem in using gentop
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|
12
|
313
|
January 20, 2023
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List index out of range when running pmx gentop
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2
|
309
|
December 29, 2022
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|
Bonds that rotated more than 30 degrees:
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|
1
|
364
|
November 3, 2022
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IndexError: list index out of range while preparing pdb file
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1
|
428
|
September 15, 2022
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Ligand topolgies for pmx
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|
5
|
518
|
September 1, 2022
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Pmx RBFE gives oddly large deltaG
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1
|
379
|
August 14, 2022
|
|
PMX engineered resiude
|
|
4
|
282
|
July 18, 2022
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Pmx ABFE ligand only simulation set-up
|
|
3
|
472
|
July 18, 2022
|
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Using pmx genlib and hybrid topologies
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3
|
507
|
July 11, 2022
|
|
PMX generating protein ligand simulation system with Charmm/cgenff forcefields
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1
|
479
|
June 14, 2022
|
|
Free energy calculations error
|
|
1
|
1498
|
June 14, 2022
|
|
Free Energy Calculation: State B has non-zero total charge: -1.000000
|
|
1
|
397
|
June 14, 2022
|
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Free energy calculation with double system/single box simulation
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|
12
|
525
|
March 30, 2022
|
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Error with Zn atom
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3
|
418
|
March 29, 2022
|
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Problem with SS bridges - Bug?
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|
3
|
327
|
March 24, 2022
|
|
Peptide Nucleic Acid Functionality
|
|
2
|
424
|
January 2, 2022
|
|
Pmx - problems reproducing benchmarking from de Groot 2020
|
|
2
|
665
|
October 17, 2021
|
|
Itp ligand file generation
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|
3
|
974
|
October 14, 2021
|
|
A non-finite potential energy in non-equilibrium transition with pmx
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|
2
|
474
|
October 1, 2021
|
|
Alchemical free energy calculations
|
|
1
|
448
|
October 1, 2021
|
|
LINCS error during Alchemical free energy calculation
|
|
1
|
549
|
September 30, 2021
|
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Energy minimization of hybrid ligand
|
|
2
|
567
|
November 13, 2020
|
|
Relative constraint deviation after LINCS
|
|
6
|
2099
|
October 9, 2020
|
|
Dual Topology Generator for Alchemical Pathways
|
|
1
|
816
|
October 9, 2020
|
|
Installed - can't import _pmx as _p
|
|
3
|
1014
|
July 4, 2020
|
|
Follow-Up from Webinar: Mutation free energy calculations with pmx
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|
0
|
1519
|
June 10, 2016
|