Hello, thanks for all the help in previous work. I’m facing a huge issue regarding the refinement of my protein bind to ADP. For some reasons, even though I checked several times that the input document is right, I always get my ADP molecule without the two phosphates and this also shows inside the output document. The refinement deliberately removes the phosphates of my molecule. I don’t know what to do (I reran the job 3 times with changing the chains etc… nothing works).
Can you share your PDB file?
I still can’t upload anything because I am “new user”
Try sending it then to bonvinlab.support@uu.nl