I am using Multibody interface of HD2.2 for water refinements and get an Internal Server Error since yesterday. I have tried to submit calculations from 3 different networks using Chrome and Firefox.
Yesterday I could submit a couple of calculations, but at some point I got an error message:
IOError: [Errno 28] No space left on device
And afterwards all the time: Internal Server Error
I would be very grateful for your help and advice about what can be the reason of this error.
Marija
I would like to ask if it is possible that after restart of the server yesterday my submitted jobs were removed or somehow paused by HD2.2?
One of my jobs finished yesterday at 20:40 and since that time non of my calculations finished, although before I was receiving around 8-10 completed calculations per day and I had around 50 queued submissions.
I have a student who started a run on the HADDOCK 2.2 webserver on Monday (9th Nov). This had progressed to it1 37% but has been stalled at this point since last night. The student has started a new run but I expect that this won’t start because the previous run is still open. Is it possible to stop the first run which is stalled so the second run can start? Or can the first run be pushed to start progressing again?
I am using the easy interface of Haddock2.2 for protein-DNA docking. But after I submitted the structures of the two molecules, I got the internal server error like this:
The server encountered an internal error or misconfiguration and was unable to complete your request.
Please contact the server administrator at root@localhost to inform them of the time this error occurred, and the actions you performed just before this error.
More information about this error may be available in the server error log.
Could you help me or give me some advice？Thanks！
Han
Good morning, since yesterday I have a problem, I have tried to verify the status of an odcking job and the following message appears:
Internal Server Error
The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application.
In any case you can download your runs by simply adding .tgz to the URL.
Unpack the archive and look into the results directory.
You will find a file called clusters_haddock-sorted.stat_best4 which contains cluster stats and you will also find PDB files of the top10 clusters.
However looking at your run (the ADN1) it seems that the molecules did not dock (which could explain the post-processing issue).
Something is wrong in the way you defined restraints (if any)… Also you DNA is taken apart.
You should define it as a single molecule with the two strand renumbered if needed to avoid overlap in residue numbering.
Thank you very much for your reply.
I have tried to do it with both strings but always get this message.
Error in PDB file. Your PDB contains multiple chains with overlapping numbering: C1 - E1 Consider selecting a chain or splitting your PDB
For this reason I separate them
Thanks
