How can I see the input data that I put in the fields for haddock run after I receive my results? For example, I do I see which residues I put on the “active residues” field ?
You can find all the information in the haddockparam.web file. You can either directly download it from the results page or retrieve it in the archive created with the docking results.
Weird I don’t have that file…nor does it appear in the results page. Maybe because I am using haddock easy? Thank you for your response.
Can you send me the URL of your run? (By private message if you don’t want to make it public)
Its ok, thanks!
Its this one: http://milou.science.uu.nl/serviceresults/HADDOCK2.2/3082103679/I-TASSERsequenciaI
Then, second line of the page:
“The file containing your docking parameters is here.” The here is a link to your parameter file (in your case: http://milou.science.uu.nl/serviceresults/HADDOCK2.2/3082103679/I-TASSERsequenciaI/haddockparam.web)
And this particular file appears in the archive you can download (first line of the page “tar file here”) and untar. It is in the root directory.
Yes I saw that but when I read the file it doesn’t appear the input active sites that I want… maybe I am just seeing it wrong.
From what I get from your param file, 2 list of active residues:
1st molecule:
activereslist = '374,376,392,394,410,412,448,450,456,457,458,466,468,469,470,471,472,473,474,475',
2nd molecule:
activereslist = '17,18,19,20,21,22,23,25,25',
Oh sorry I was being really distracted, thank you so much!