The HADDOCK category is meant to discuss any HADDOCK-related issue. For general information about HADDOCK refer to HADDOCK – Bonvin Lab
The result from webserver generates a nice index.html file locally that is almost identical to the result page online except for the graphic representation. Is it possible to include those plots in the index.html since these results are well-organized and clearly demonstrated in a simple page?
Well done haddock!
The plots are generated on the fly and dynamical (you can interact with them).
But the 2.4 server offers the option to download static versions of those (check the Model Analysis section of the results pages).
Also present when you download the full archive of the run (but not included indeed in the index.html file)
Thanks for the information. Where are the plots in the full archive of the run result?
Actually I just realised they are not. You should download them using the provided link on the results page:
Model Analysis (Download all plots)
Thanks. Maybe it’s a good idea to include them in the archived result so that a single download will keep everything.
During a recent run last year, I forgot to down the graphic results. Is there a way to retrieve them as the original data seems to be removed? Or can we regenerate them with the existing results?
If you downloaded the full run, you might find graphic files in the run directory.
If not then no way to regenerate those.
But you could repeat the run by submitting the json parameter file (if you saved it - also present in the run archive) to the file upload interface
What I downloaded is the result archive. And there is no “run” directory after I unpacked it, only a file named “run.cns”.
You will find in there a json file that allows you to repeat the run simply by uploading it to the file upload interface of the server
Thanks for your suggestion. Is there a reason why these graphic results are NOT included in the normal result archive?
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They are generated by the server machinery and not HADDOCK on the backend.
But we will take note of it as a feature request.
In HADDOCK3, the software directly generates those plots. Currently working on a HADDOCK3 server