How can I use GLYCANS webserver for glycoprotein-protein docking on HADDOCK?

HADDOCK
1

The HADDOCK category is meant to discuss any HADDOCK-related issue. For general information about HADDOCK refer to http://www.bonvinlab.org/software/haddock2.2

Hi,

I want to use GLYCANS server to create 3D glycoprotein structure and then I want to use HADDOCK for carbohydrate-protein docking. Are there any tutorial or guideline for GLYCANS server? http://haddock.science.uu.nl/enmr/services/GLYCANS/

2

Not really - it was never published. But on the server page there is a link to a documentation page:

http://haddock.science.uu.nl/enmr/services/GLYCANS/Help/glycans_help.html

Also the resulting topologies and parameters should then be used with a local version of HADDOCK since the web server does not allow uploading topo/param files.