Restraining glycans in a glycosylated protein docking using HADDOCK (locally)

HADDOCK
1

Hi all,
I want to use HADDOCK for docking a glycosylated protein with an antibody. For this purpose, I need to put some restraints to the sugar moieties (glycans). Can I get some help for the same?

Thanks!

2

In principle HADDOCK should recognise glycans.
At least the supported ones. Check for the list and naming:

https://rascar.science.uu.nl/haddock2.4/library

So if your glycans are in that list, there should be no need to define additional restraints.