Protein-carb using the HADDOCK server?

[Gianluca_Cioci]

Dear All,

Is it possible to perform protein-carbohydrate docking using the HADDOCK server ?

Thank you,

GIA

[amjjbonvin]

Hi GIA,

Check the following thread for instructions:

Docking tetrasaccharide to lectin

Hi, I am running some docking experiments on a tetrasaccharide docking to a lectin. The files I submit are 1) receptor/lectin in PDB format, chains A and B, which make up the binding site, 2) tetrasaccharide, in PDB format with HETATM (instead of ATOM) and 4 residues. Both files seem to be processed correctly and the job is submitted. In the results the tetrasaccharide is severed in 4 separate units though, docked separately, as it seems. Not sure what I am doing wrong. Any ideas? Thank you in …