The HADDOCK category is meant to discuss any HADDOCK-related issue. For general information about HADDOCK refer to HADDOCK – Bonvin Lab
I just wanted to know each parameter i am geeting in".stat" file after docking is representing what?
#Cluster haddock-score sd rmsd sd rmsd-Emin sd Nstruc Einter sd Enb sd Evdw+0.1Eelec sd Evdw sd Eelec sd Eair sd Ecdih sd Ecoup sd Esani sd Evean sd Edani sd #AIRviol sd #dihedviol sd #Coupviol sd #Saniviol sd #Veanviol sd #Daniviol sd BSA sd #dH sd #Edesolv sd
especially what is dH?
And best to forget about dH (we should remove it).
But then how i can comment on binding energy of Protein and DNA ? I have WT and mutant Protein, i was actually comparing dH between them. it will be correct interepretation right? I understand in previous discussion you have mentioned that you are not commenting on binding . but what will be other factors which will help me to decide if mutation in specfic position affecting protein’s function(binding DNA).
You can compare the HADDOCK scores, but these are just scores on not binding affinities.