The reduce
executable is downloaded from MolProbity/reduce at master · rlabduke/MolProbity · GitHub
Is this the correct reduce
executable?
I have put it in my working directory with the pdb file, but running
~/software/haddock-tools/molprobity.py 4G6K-clean.pdb
got the error of not finding the reduce
executable:
## Executing Reduce to assign histidine protonation states
## Input PDB: 4G6K-clean.pdb
Traceback (most recent call last):
File "/home/lanselibai/software/haddock-tools/molprobity.py", line 137, in <module>
hadded, process_error = run_molprobity(open_fhandle)
File "/home/lanselibai/software/haddock-tools/molprobity.py", line 58, in run_molprobity
reduce_exec = _check_molprobity_path(molprobity_executable)
File "/home/lanselibai/software/haddock-tools/molprobity.py", line 47, in _check_molprobity_path
raise Exception("Could not find path to 'reduce' executable: Are you sure it is installed?\n")
Exception: Could not find path to 'reduce' executable: Are you sure it is installed?