I am very new to the the system so I tried to do the tutorial and I when i was finished i submitted but later found that i had to define my active/passive residues but there was no mention of the information i need to put there, Is there an option that the system automatically puts in that needs to unchecked or did i miss something whilst doing the tutorial?
And a further question, I have tried to dock a ligand to a protein but when i provide info for the active site for the protein, i need to define the active residues of my ligand but what should I write? If I write the same residues as my protein it gives me an error saying that ‘manual restrains and random patches are mutually exclusive’. If I leave them both empty it says that I need to at least define active/passive residues for one molecule but that doesn’t make sense since I would have done that during the first run.
The HADDOCK category is meant to discuss any HADDOCK-related issue. For general information about HADDOCK refer to http://www.bonvinlab.org/software/haddock2.2