Hi, in choosing the best structure to analyze, I’m choosing the cluster with the lowest z-score (most negative). However, the HADDOCK score is positive with a high restraint energy. I ran my complexes using the Easy and Prediction interface after retrieving active/passive residues from CPORT.
I read that to deduce the score, 10% of the restraint energy should be subtracted from it. Why is that so?
Is there a way I can improve the score?