Hello, I keep getting this error:
The following error occurred when processing one of your PDB file: Resnum field should contain only numbers but " 104A" was found.
How can I fix it with PDB tools?
Thanks.
This is a case of insertion numbering, typical for antibodies.
You can use PDB-Tools from “deinserting” those residues (note that it will change the numbering of your PDB file).
Use the pdb_fixinsert command for this.
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And if working with antibodies to check the relevant tutorials on Education & Tutorials of the Bonvin Lab – Bonvin Lab
Thank you!