Getting error literal for int() with base 10: ' 104B'

HADDOCK
1

Hi All,

I am getting the following error while setting up antigen-antibody docking on the Haddock server. Can someone help me with what this error means and how to fix that?

An error has occurred, here are the details: invalid literal for int() with base 10: ’ 104B’

Thanks

Varun

2

Antibodies often have a residue numbering with insertion, meaning for example you will have multiple residue 104: 104, 104A, 104B… and the next residue would then be 105

This could be your problem.

Try using pdb_fixinsert from our pdb-tools (local or server)

3

Thanks. It worked.

Varun