Error when running $WDIR/encode-contacts.csh structures/it0/Acontacts.lis AcrB_contacts.pdb

HADDOCK
5

Hello,

Sorry for those naive questions but they might help to narrow down the potential issues you’ve encountered:

  1. Did you try to run the script directly? Something like:
    $ANA_DIR/zone_b -50 -zA2,A2 test.pdb (This assumes that you have a chain A with a residue id 2 in your PDB).
    It should assign the value 50 in the B-factor column of resid 2 of chain A in your test.pdb (it willl output it directly)
  2. Out of curiosity, scripts are all executable? (chmod a+x zone_b to allow for execution)

Thanks in advance,

Mikael