i have been trying to dock a small ligand to a protein but haddock tells me non of the active residues is solvent accessible. and i cant move further. please i need help on how to move further
Dear sani,
If you are using haddock2.4/2.5 webserver, please consider deactivating the Remove buried active/passive residues from selection
option when defining active/passive residues in the input parameter
panel (second form).
With the hope this helps you.
Cheers
Thanks for the advice
I tried to deactivate that very option, but it tells me “You need Expert/Guru access to turn this off”.
But if none of your active site residues are solvent accessible you might have a hard time to get your ligand in there…