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Pmx RBFE gives oddly large deltaG
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|
1
|
448
|
August 14, 2022
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|
PMX engineered resiude
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|
4
|
346
|
July 18, 2022
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Pmx ABFE ligand only simulation set-up
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3
|
553
|
July 18, 2022
|
|
Using pmx genlib and hybrid topologies
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3
|
608
|
July 11, 2022
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PMX generating protein ligand simulation system with Charmm/cgenff forcefields
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1
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541
|
June 14, 2022
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Free energy calculations error
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|
1
|
1647
|
June 14, 2022
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|
Free Energy Calculation: State B has non-zero total charge: -1.000000
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|
1
|
447
|
June 14, 2022
|
|
Free energy calculation with double system/single box simulation
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12
|
725
|
March 30, 2022
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Error with Zn atom
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|
3
|
464
|
March 29, 2022
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Problem with SS bridges - Bug?
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|
3
|
377
|
March 24, 2022
|
|
Peptide Nucleic Acid Functionality
|
|
2
|
494
|
January 2, 2022
|
|
Pmx - problems reproducing benchmarking from de Groot 2020
|
|
2
|
729
|
October 17, 2021
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Itp ligand file generation
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|
3
|
1103
|
October 14, 2021
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A non-finite potential energy in non-equilibrium transition with pmx
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|
2
|
537
|
October 1, 2021
|
|
Alchemical free energy calculations
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|
1
|
504
|
October 1, 2021
|
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LINCS error during Alchemical free energy calculation
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|
1
|
592
|
September 30, 2021
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Energy minimization of hybrid ligand
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2
|
620
|
November 13, 2020
|
|
Dual Topology Generator for Alchemical Pathways
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|
1
|
930
|
October 9, 2020
|
|
Installed - can't import _pmx as _p
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|
3
|
1088
|
July 4, 2020
|
|
Follow-Up from Webinar: Mutation free energy calculations with pmx
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|
0
|
1545
|
June 10, 2016
|