Tubulin docking

[Debadrita_Basu]

I wanted to dock 1jff, the tubulin structures. where, I know the interface between alpha alpha and beta beta subunit. But, both the chains has same residue numbers. How to dock them laterally?

[amjjbonvin]

Check the following thread in our forum:

Dealing with dimers

Hellow everybody I have problems using Haddock for dimers. I’ve received several different messages: Using pdb (from pdb databse) There was an inconsistency in your data Error message First pdb file contains multiple forms of the same residue. This is not supported in the current form. If you would like to supply multiple conformations, please create an ensemble using a pdb with only one chain (but is a dimer) There was an inconsistency in your data Error message First pdb file contai…

Or simply search for “dimer” in the forum