Single cluster generated. I am getting 400 structures in a single cluster which represent 100% of the water refined models. What does it signify about the binding affinity? Why the docked structures not solicited into various clusters found conventionally? The system belongs to antibody and antigen docking…please help
Thanks for your question! Please remember that the forum is searchable and your question might have already been answered.
Have a look at this topic about cluster and bonvinlab.org/education.