PDB residues renumbering?


#1

The HADDOCK category is meant to discuss any HADDOCK-related issue. For general information about HADDOCK refer to http://www.bonvinlab.org/software/haddock2.2

Hi, I am using a PDB file (one of the protein chains) in my docking process which has residues numbered 5 to 75. When I specify active and passive residues, should I use the numbering that is in the PDB (5-75) or does HADDOCK automatically renumber the residues, therefore I should use 1-70?

Thanks!!!
Salva


#2

Dear Salva,

Keep the numbering of your original PDB file

Cheers,
Adrien