Is there a maximum number of atoms for a single molecule in a multi-body interface docking run? I have a subunit with 8500 atoms that seems to have been rejected. Total atom number in the run is much less than the 50000 atom overall limit.
The HADDOCK category is meant to discuss any HADDOCK-related issue. For general information about HADDOCK refer to http://www.bonvinlab.org/software/haddock2.2