Hi! I am trying to dock an hexasaccharide in a receptor. For doing that, I have extracted the ligand (DP6) from the PDB of this ligand forming a complex with another protein (4MB5). I am trying to dock it but I receive always the following message:
There was an inconsistency in your data
Instances of ligand NAG do not contain the same atoms
I have checked the PDB of the ligand and there are not atom duplicated neither occupancies different to 1.0
Could you give me some advise?
Thanks in advance,