I am trying to dock a single protein to a complex (using several molecules / pdbs as input). I want several segments as fully flexible.
On the webserver this setup works and the segments are moving as expected. However, using the same configurations in run.cns locally, the parts are not moving at all. It seems to work if I do one of the segments separately, but not all of them together.
I don’t know where this is going wrong. I can share with you a link to my run on the webserver if that helps.