The HADDOCK category is meant to discuss any HADDOCK-related issue. For general information about HADDOCK refer to http://www.bonvinlab.org/software/haddock2.2
Can I set up a run on the webserver or locally, if the interacting domains are in the same polypeptide chain?
I would like to model the binding orientation to each other, and also the unstructured linker region between them. I can define several restraints for the interaction from mutation and NMR studies, and also have SAXS data of the linked domains.
Is there any possibility to do that?
Thank you for your kind reply!