Hi, I have a protein containing 6 domains that are separated by a linker. The provided protein structure is linear (provided by alphafold).
Can I “change” the linear form of the protein for docking? The individual domains are fully flexible and I want to dock the protein around another protein at multiple sides (to wrap around the other).
However, the linear form only docks to one side.
I tried to mark the protein as fully flexible and to create a tbl file, but the 6-domain protein is still in linear form.
Thank you so much!