The HADDOCK category is meant to discuss any HADDOCK-related issue. For general information about HADDOCK refer to HADDOCK – Bonvin Lab
I’m a molecular biologist and a newbie to the docking field. So if my question is irrelevant or very basic, I’d like to apologize ahead for my ignorance.
I’ve docked my complexes in HADDOCK and obtained results that are parallel with wetlab. I want to assess the quality of my models with a universal metric. I’ve seen that HADDOCK scores would give me which model is better if I compare them among each other, but because I cannot validate models I’ve generated with HADDOCK in wetlab, I need some kind of metric that would do so. I’ve seen that there’re assesment criteria provided by CAPRI. I need to measure FCC as I have three proteins docked in HADDOCK. What should I use to measure FCC?
P.S. I tried to run DockQ on my computer but I received many warning messages and I wasn’t successful.
Thank you for your concern and understanding.