Dear HADDOCK Team,
I hope this message finds you well.
I have performed docking simulations between proteins A and B, as well as between proteins A and C using the HADDOCK tool. From these simulations, I have obtained the following scoring metrics:
HADDOCK score
Cluster size
RMSD from the overall lowest-energy structure
Van der Waals energy
Electrostatic energy
Desolvation energy
Restraints violation energy
Buried Surface Area
Z-Score
However, I am uncertain about how to comprehensively analyze these metrics to determine whether the docking between A and B is better or worse compared to the docking between A and C. Therefore, I am seeking your expertise on how to scientifically and effectively compare these docking results based on the provided scoring metrics.
Thank you very much for your assistance.
Best regards,