3D-Dart Error for Haddock Input

HADDOCK
1

Traceback (most recent call last):
File “/Users/nikj26/3ddart/3D-DART/New Folder With Items/system/CommandLineParser.py”, line 33, in
from DARTserver import WebServer
File “/Users/nikj26/3ddart/3D-DART/New Folder With Items/system/DARTserver.py”, line 456
if os.path.isfile(SERVERCOUNTFILE):
TabError: inconsistent use of tabs and spaces in indentation

Attempt to fix this error by changing from tabs to spaces as was needed to be done on xpath.py and commandlineparser.py has not worked. Any other suggestions on how to fix this would be great.

Or alternatively if there is a different way to create a DNA PDB file for input into Haddock3 I would appreciate those suggestions as well. I have a 1500bp sequence I need to make the PDB file with.

Thanks!

2

Dear Nik,

You want to build an ab-initio structural model of a 1500 bp sequence ?
I am not an expert in DNA modelling, but I am not sure any tool is able to do it properly.

You can always try to use PyMOL for that (try: Fnab - PyMOLWiki).

Did you replace \t by (four spaces) ?

Stay tuned, maybe someone else will add some better answer