Hello,
Is possible to input peptides containg D-aminoacids as ligands in HADDOCK?
Regards
Yes - they should be recognized provided the chirality is indeed D
Thank you !
Regards
Hi,
So is it enough to input the PDB file of the a peptide with D-amino acids- and the run will run correctly on HADDOCK2.5 local version?
I don’t need to input new parameter and topology files? or use different settings?
Thanks!
Yes, provided the amino acid has the right chirality (i.e. D in this case), HADDOCK should recognise it automatically.