Model Analysis: Plot

Hi Aron

We usually base on analysis on the HADDOCK score.

Relevant points to consider:

  • is the score of the best cluster significantly different from the second best and such?
  • how many models to cluster? I.e. is there some convergence in your simulations?
  • how do the plots look like? E.g. a “potato” of points is not indicative of good convergence.
  • Do you see convergence / “binding funnels”?
  • Do your model satisfy the input data?

Check our various online tutorials at Education & Tutorials of the Bonvin Lab – Bonvin Lab

And also our best practice guide at https://www.bonvinlab.org/software/bpg/

and in particular: https://www.bonvinlab.org/software/bpg/analysis/#dos-and-donts