Hello,
I was just trying to get a local PRODIGY install running, and although I think I have everything in place (I cloned the PRODIGY git repository and followed the instructions in the readme to install everything else), I’m getting a missing module error when trying to run predict_IC.py (see following message). I’m missing “aa_properties” so clearly something’s not where it needs to be, but I don’t know where “aa_properties” is supposed to come from.
My config.py paths look like this:
FREESASA_BIN = “/usr/local/bin/freesasa”
FREESASA_PAR = “/Users/ME/freesasa-2.0.3/share/protor.config”
Thanks,
Matt
predict_IC.py error message:
Traceback (most recent call last):
File “predict_IC.py”, line 32, in
from lib.freesasa import execute_freesasa
File “/Users/ME/prodigy/lib/freesasa.py”, line 27, in
from aa_properties import rel_asa
ModuleNotFoundError: No module named ‘aa_properties’
you could try to use the new package implementation by installing prodigy directly from the respective branch with pip: pip install git+git://github.com/haddocking/prodigy@python3_package
(In this case the environment variables “FREESASA_BIN” and “FREESASA_PAR” should not be set to use the freesasa python package) Note: if you are using python 3, your biopython version should be >=1.71 as in older versions a bug causes the results to be incorrect. Ideally you might validate a local test run with the results provided by the server.
