i’m trying to use Haddock2.2 to compute electrostatic energy in order to use in Prodigy-ligand web service.
My complex is a protein/phospholipid (PC) but PRODRG is finding unusual geometry:
PRODRG> Molecule complexity index: 2.07.
PRODRG> 0 explicit hydrogen(s) added.
PRODRG> 29 bonds 11 ambiguous
PRODRG> 42 bond angles 16 ambiguous
PRODRG> C9 has unusual geometry. Check coordinates!
Is haddock can deal with phospholipid ?