Errors msgs in haddock.out

HADDOCK
1

Hello,

I’m getting errors msgs in haddock.out. Docking run seems to be finished and OK, but I don’t know if such errors are affecting my docking results. Msgs are listed bellow:

…

[2025-11-27 19:18:49] Only files for structure #1 will be kept…
[2025-11-27 19:18:49]
Traceback (most recent call last):
File “/trinity/rascar/enmr/software/haddock2.5-grid/haddock/run_haddock.py”, line 1788, in
main()
File “/trinity/rascar/enmr/software/haddock2.5-grid/haddock/run_haddock.py”, line 1784, in main
messages.stop_haddock(exit_code=0)
TypeError: stop_haddock() got an unexpected keyword argument ‘exit_code’
[2025-11-27 19:18:49]

Then HADDOCK2.5 seems to restart, but got another error msg:

…

[2025-11-27 19:19:09] Only files for structure #1 will be kept…
[2025-11-27 19:19:09]
Traceback (most recent call last):
File “/trinity/rascar/enmr/software/haddock2.5-grid/haddock/run_haddock.py”, line 1788, in
main()
File “/trinity/rascar/enmr/software/haddock2.5-grid/haddock/run_haddock.py”, line 1784, in main
messages.stop_haddock(exit_code=0)
TypeError: stop_haddock() got an unexpected keyword argument ‘exit_code’
Only files for structure #1 will be kept…

  • BEGIN: Thu Nov 27 19:19:29 2025
  • Parsing 201 contact files
  • Calculating Matrix
  • Writing matrix to
  • END: Thu Nov 27 19:19:29 2025 [ 0.01 seconds elapsed]
    mv: No match.
    /trinity/rascar/enmr/csb_webserver/data/results/haddock24/7667502933/590814-SPRDHLS/structures/it1/water/CAPRI_analysis/../analysis//RMSD_Calc.sh: line 58: [: ==: unary operator expected
    /trinity/rascar/enmr/csb_webserver/data/results/haddock24/7667502933/590814-SPRDHLS/structures/it1/water/CAPRI_analysis/../analysis//RMSD_Calc.sh: line 192: [: missing ]' /trinity/rascar/enmr/csb_webserver/data/results/haddock24/7667502933/590814-SPRDHLS/structures/it1/water/CAPRI_analysis/../analysis//RMSD_Calc.sh: line 58: [: ==: unary operator expected /trinity/rascar/enmr/csb_webserver/data/results/haddock24/7667502933/590814-SPRDHLS/structures/it1/water/CAPRI_analysis/../analysis//RMSD_Calc.sh: line 192: [: missing ]’
    rm: No match.
    /usr/bin/ls: write error: Broken pipe

Am I missing something?

Thanks in advance!

Best regards.

Leo.

2

If the results page on the server looks ok I would not worry about it.