I am docking DNA on a modeled protein, but I am getting following error. Please help
There was an inconsistency in your data
Second pdb file is incorrectly formatted. Please align the columns of your PDB properly.
Directory of the run: http://milou.science.uu.nl/serviceresults/HADDOCK2.2/8065484933/run5
Well you must have edited your PDB file and modified the columns… So correct it. The PDB format is a strict one!
Note that the forum is searchable. Here is another thread about this problem: