I am using the web platform. I submitted a model composed of two chains (A : from residue 1 to residue 760 ; B : from residue 761 to residue 1520) to which I want to dock another protein (Transferrin).
When I download the input files, I could see that the original model submitted is modified by Haddock and now contains only one chain (A : from residue 1 to residue 1520). My problem is that a link is created between the last residue of former chain A (residue 760) and the first residue of former chain B (residue 761) but I don’t want this bond which makes no sense for my model. What could I do to avoid this bond to be created by Haddock ?
Thank you in advance,