The simple answer is yes!
See for example our recent D3R paper, which does include ranking of various ligands for one receptor.
The HADDOCK score does not do good job at it… But we developed a simple contact-based predictor instead.
Z. Kurkcuoglu, P.I. Koukos, N. Citro, M.E. Trellet, J.P.G.L.M. Rodrigues, I.S. Moreira, J. Roel-Touris, A.S.J. Melquiond, C. Geng, J. Schaarschmidt, L.C. Xue, A. Vangone and A.M.J.J. Bonvin.
Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.
J. Comp. Aid. Mol. Des. 32, 175-185 (2018).
And we should soon have results of the Grand Challenge 3…