#===========================================================# title = "HADDOCK3 Setup file" #===========================================================# [molecules] mol1 = 'tlr4_1.pdb' mol2 = 'pep_1.pdb' [restraints] ambig = 'ambig.tbl' [identifier] run = 2 [execution_parameters] scheme = 'parallel' nproc = 4 [stage] [stage.topology] recipe='default' [stage.rigid_body] recipe='rigid-body-minimal.cns' sampling = 1000 params.auto_his = true [stage.semi_flexible] recipe='default' sampling = 400 [stage.water_refinement] recipe='default' sampling = 400 #===========================================================#